MSA BLAT Score Browser Human Baboon Chimp Crab Eating Macaque Gibbon Green Monkey Rhesus

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Conversation of chr10:100381166..100381267 in Human

TE-derived TSS Region: chr10:100381166..100381267

This page displays the conservation of transposon (TE) - derived transcription start site (TSS) region across mammals.

This figure displays the multiple sequence alignment of human TE-derived TSS region and homologous regions in mammals. You can discern the sequence similarity between them.

For what species were analyzed using BLAT?

Modified BLAT Score

This figure illustrates the modified BLAT score of human TE-derived TSS region compared to other mammals based on BLAT analysis. To ensure alignment accuracy, we have selectively retained sequences with a modified BLAT score greater than 0.7.

What's modified BLAT score?

Multiple Sequence Alignment Browser

Through the genome browser, you can explore the sequence features of homologous regions, including the presence of TE elements and their involvement as TSSs.

Human

Assembly: GRCh38
TE-derived TSS Region:

Baboon

Assembly: papAnu4
Modified BLAT Score: 0.95
Region conserved to human TE-derived TSS Region:

Chimp

Assembly: panTro6
Modified BLAT Score: 0.99
Region conserved to human TE-derived TSS Region:

Crab Eating Macaque

Assembly: macFas5
Modified BLAT Score: 0.931
Region conserved to human TE-derived TSS Region:

Gibbon

Assembly: nomLeu3
Modified BLAT Score: 0.95
Region conserved to human TE-derived TSS Region:

Green Monkey

Assembly: chlSab2
Modified BLAT Score: 0.95
Region conserved to human TE-derived TSS Region:

Rhesus

Assembly: rheMac10
Modified BLAT Score: 0.931
Region conserved to human TE-derived TSS Region: